Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 AC019129.2-201ENST00000609837 1235 ntBASIC16.64■□□□□ 0.25
PROM1O43490 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.64■□□□□ 0.25
PROM1O43490 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PROM1O43490 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.64■□□□□ 0.25
PROM1O43490 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.64■□□□□ 0.25
PROM1O43490 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PROM1O43490 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.63■□□□□ 0.25
PROM1O43490 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 AC124067.4-201ENST00000519691 2379 ntBASIC16.63■□□□□ 0.25
PROM1O43490 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PROM1O43490 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.63■□□□□ 0.25
PROM1O43490 RCN1P2-201ENST00000398357 915 ntBASIC16.63■□□□□ 0.25
PROM1O43490 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.63■□□□□ 0.25
PROM1O43490 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.63■□□□□ 0.25
PROM1O43490 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.63■□□□□ 0.25
PROM1O43490 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 AL049757.1-201ENST00000616842 1596 ntBASIC16.63■□□□□ 0.25
PROM1O43490 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PROM1O43490 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PROM1O43490 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.63■□□□□ 0.25
PROM1O43490 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 INTS4P1-201ENST00000438455 1935 ntBASIC16.62■□□□□ 0.25
PROM1O43490 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.62■□□□□ 0.25
PROM1O43490 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 PP12613-201ENST00000424958 2230 ntBASIC16.62■□□□□ 0.25
PROM1O43490 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PROM1O43490 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.62■□□□□ 0.25
PROM1O43490 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PROM1O43490 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.62■□□□□ 0.25
PROM1O43490 AC096582.2-201ENST00000510860 516 ntBASIC16.62■□□□□ 0.25
PROM1O43490 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.62■□□□□ 0.25
PROM1O43490 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.62■□□□□ 0.25
PROM1O43490 AC109462.3-201ENST00000573934 613 ntBASIC16.62■□□□□ 0.25
PROM1O43490 AC099336.1-202ENST00000602961 463 ntBASIC16.62■□□□□ 0.25
PROM1O43490 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.62■□□□□ 0.25
PROM1O43490 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
PROM1O43490 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PROM1O43490 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PROM1O43490 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PROM1O43490 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
PROM1O43490 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.61■□□□□ 0.25
PROM1O43490 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.61■□□□□ 0.25
PROM1O43490 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.61■□□□□ 0.25
PROM1O43490 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms