Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 KRT18P65-201ENST00000439811 1286 ntBASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 DENND3-207ENST00000518347 850 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 AC116353.5-201ENST00000638148 1699 ntBASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 CICP6-201ENST00000457191 2729 ntBASIC13.63□□□□□ -0.23
TRAV5A0A0B4J249 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 AC113404.2-201ENST00000507884 177 ntBASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 EGLN1P1-201ENST00000531623 762 ntBASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 USP36-216ENST00000589424 970 ntTSL 5 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.62□□□□□ -0.23
TRAV5A0A0B4J249 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms