Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.77■■□□□ 1.4
PCDHB3Q9Y5E6 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
PCDHB3Q9Y5E6 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
PCDHB3Q9Y5E6 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.76■■□□□ 1.39
PCDHB3Q9Y5E6 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.76■■□□□ 1.39
PCDHB3Q9Y5E6 AL157400.5-201ENST00000507624 621 ntBASIC23.76■■□□□ 1.39
PCDHB3Q9Y5E6 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.76■■□□□ 1.39
PCDHB3Q9Y5E6 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.76■■□□□ 1.39
PCDHB3Q9Y5E6 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.76■■□□□ 1.39
PCDHB3Q9Y5E6 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB3Q9Y5E6 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB3Q9Y5E6 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.75■■□□□ 1.39
PCDHB3Q9Y5E6 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB3Q9Y5E6 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.75■■□□□ 1.39
PCDHB3Q9Y5E6 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
PCDHB3Q9Y5E6 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB3Q9Y5E6 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 AL359258.2-201ENST00000564063 1566 ntBASIC23.74■■□□□ 1.39
PCDHB3Q9Y5E6 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
PCDHB3Q9Y5E6 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHB3Q9Y5E6 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.73■■□□□ 1.39
PCDHB3Q9Y5E6 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHB3Q9Y5E6 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHB3Q9Y5E6 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHB3Q9Y5E6 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHB3Q9Y5E6 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.72■■□□□ 1.39
PCDHB3Q9Y5E6 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.72■■□□□ 1.39
PCDHB3Q9Y5E6 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
PCDHB3Q9Y5E6 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHB3Q9Y5E6 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.71■■□□□ 1.39
PCDHB3Q9Y5E6 AC145676.1-201ENST00000514988 2004 ntBASIC23.71■■□□□ 1.39
PCDHB3Q9Y5E6 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
PCDHB3Q9Y5E6 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.7■■□□□ 1.39
PCDHB3Q9Y5E6 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.7■■□□□ 1.39
PCDHB3Q9Y5E6 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.7■■□□□ 1.38
PCDHB3Q9Y5E6 TSPY13P-201ENST00000338964 914 ntBASIC23.7■■□□□ 1.38
PCDHB3Q9Y5E6 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHB3Q9Y5E6 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHB3Q9Y5E6 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHB3Q9Y5E6 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHB3Q9Y5E6 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHB3Q9Y5E6 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB3Q9Y5E6 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.68■■□□□ 1.38
PCDHB3Q9Y5E6 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.67■■□□□ 1.38
PCDHB3Q9Y5E6 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHB3Q9Y5E6 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.66■■□□□ 1.38
PCDHB3Q9Y5E6 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.66■■□□□ 1.38
PCDHB3Q9Y5E6 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
PCDHB3Q9Y5E6 AC007029.1-201ENST00000604183 313 ntBASIC23.65■■□□□ 1.38
PCDHB3Q9Y5E6 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.65■■□□□ 1.38
PCDHB3Q9Y5E6 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHB3Q9Y5E6 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHB3Q9Y5E6 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHB3Q9Y5E6 KRT18P60-201ENST00000312876 1297 ntBASIC23.64■■□□□ 1.37
PCDHB3Q9Y5E6 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.64■■□□□ 1.37
PCDHB3Q9Y5E6 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.64■■□□□ 1.37
PCDHB3Q9Y5E6 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHB3Q9Y5E6 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHB3Q9Y5E6 ATP5G2P3-201ENST00000429083 425 ntBASIC23.63■■□□□ 1.37
PCDHB3Q9Y5E6 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHB3Q9Y5E6 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHB3Q9Y5E6 SMPD5-203ENST00000639008 1464 ntBASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 AC004987.1-201ENST00000428627 508 ntBASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHB3Q9Y5E6 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
PCDHB3Q9Y5E6 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHB3Q9Y5E6 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.61■■□□□ 1.37
PCDHB3Q9Y5E6 AC020928.2-201ENST00000588717 2197 ntBASIC23.61■■□□□ 1.37
PCDHB3Q9Y5E6 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHB3Q9Y5E6 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHB3Q9Y5E6 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
PCDHB3Q9Y5E6 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB3Q9Y5E6 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB3Q9Y5E6 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHB3Q9Y5E6 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHB3Q9Y5E6 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.59■■□□□ 1.37
PCDHB3Q9Y5E6 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHB3Q9Y5E6 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.59■■□□□ 1.37
PCDHB3Q9Y5E6 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms