Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC22.52■■□□□ 1.2
USE1Q9NZ43 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USE1Q9NZ43 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.52■■□□□ 1.19
USE1Q9NZ43 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
USE1Q9NZ43 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
USE1Q9NZ43 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USE1Q9NZ43 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USE1Q9NZ43 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USE1Q9NZ43 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.51■■□□□ 1.19
USE1Q9NZ43 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USE1Q9NZ43 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.51■■□□□ 1.19
USE1Q9NZ43 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USE1Q9NZ43 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USE1Q9NZ43 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.5■■□□□ 1.19
USE1Q9NZ43 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
USE1Q9NZ43 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USE1Q9NZ43 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC22.5■■□□□ 1.19
USE1Q9NZ43 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
USE1Q9NZ43 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USE1Q9NZ43 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USE1Q9NZ43 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC22.49■■□□□ 1.19
USE1Q9NZ43 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.49■■□□□ 1.19
USE1Q9NZ43 AC108673.1-201ENST00000510422 1159 ntBASIC22.49■■□□□ 1.19
USE1Q9NZ43 CHML-205ENST00000638160 705 ntTSL 3 BASIC22.49■■□□□ 1.19
USE1Q9NZ43 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
USE1Q9NZ43 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.49■■□□□ 1.19
USE1Q9NZ43 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.49■■□□□ 1.19
USE1Q9NZ43 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USE1Q9NZ43 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USE1Q9NZ43 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.49■■□□□ 1.19
USE1Q9NZ43 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USE1Q9NZ43 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USE1Q9NZ43 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USE1Q9NZ43 AC097358.2-201ENST00000607541 1159 ntBASIC22.48■■□□□ 1.19
USE1Q9NZ43 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
USE1Q9NZ43 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
USE1Q9NZ43 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USE1Q9NZ43 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USE1Q9NZ43 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
USE1Q9NZ43 AC136428.2-201ENST00000563187 214 ntBASIC22.47■■□□□ 1.19
USE1Q9NZ43 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
USE1Q9NZ43 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
USE1Q9NZ43 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USE1Q9NZ43 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
USE1Q9NZ43 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
USE1Q9NZ43 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.45■■□□□ 1.19
USE1Q9NZ43 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
USE1Q9NZ43 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
USE1Q9NZ43 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.45■■□□□ 1.18
USE1Q9NZ43 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC22.45■■□□□ 1.18
USE1Q9NZ43 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
USE1Q9NZ43 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
USE1Q9NZ43 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
USE1Q9NZ43 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USE1Q9NZ43 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USE1Q9NZ43 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.44■■□□□ 1.18
USE1Q9NZ43 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
USE1Q9NZ43 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.43■■□□□ 1.18
USE1Q9NZ43 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.43■■□□□ 1.18
USE1Q9NZ43 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.43■■□□□ 1.18
USE1Q9NZ43 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
USE1Q9NZ43 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC22.43■■□□□ 1.18
USE1Q9NZ43 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.43■■□□□ 1.18
USE1Q9NZ43 MIR6090-201ENST00000622481 60 ntBASIC22.43■■□□□ 1.18
USE1Q9NZ43 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
USE1Q9NZ43 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USE1Q9NZ43 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.42■■□□□ 1.18
USE1Q9NZ43 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC22.42■■□□□ 1.18
USE1Q9NZ43 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.42■■□□□ 1.18
USE1Q9NZ43 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USE1Q9NZ43 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USE1Q9NZ43 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC22.41■■□□□ 1.18
USE1Q9NZ43 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC22.41■■□□□ 1.18
USE1Q9NZ43 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USE1Q9NZ43 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
USE1Q9NZ43 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
USE1Q9NZ43 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USE1Q9NZ43 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USE1Q9NZ43 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USE1Q9NZ43 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.4■■□□□ 1.18
USE1Q9NZ43 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USE1Q9NZ43 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.4■■□□□ 1.18
USE1Q9NZ43 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
USE1Q9NZ43 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.39■■□□□ 1.18
USE1Q9NZ43 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
USE1Q9NZ43 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
USE1Q9NZ43 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USE1Q9NZ43 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.39■■□□□ 1.17
USE1Q9NZ43 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.39■■□□□ 1.17
USE1Q9NZ43 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.39■■□□□ 1.17
USE1Q9NZ43 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.39■■□□□ 1.17
USE1Q9NZ43 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
USE1Q9NZ43 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.38■■□□□ 1.17
USE1Q9NZ43 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
USE1Q9NZ43 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
USE1Q9NZ43 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC22.38■■□□□ 1.17
USE1Q9NZ43 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USE1Q9NZ43 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
USE1Q9NZ43 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
USE1Q9NZ43 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms