Protein–RNA interactions for Protein: Q9NUP9

LIN7C, Protein lin-7 homolog C, humanhuman

Known RBP Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7CQ9NUP9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIN7CQ9NUP9 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LIN7CQ9NUP9 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LIN7CQ9NUP9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIN7CQ9NUP9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.12■□□□□ 0.81
LIN7CQ9NUP9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.12■□□□□ 0.81
LIN7CQ9NUP9 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LIN7CQ9NUP9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LIN7CQ9NUP9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIN7CQ9NUP9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.11■□□□□ 0.81
LIN7CQ9NUP9 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.11■□□□□ 0.81
LIN7CQ9NUP9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIN7CQ9NUP9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.1■□□□□ 0.81
LIN7CQ9NUP9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIN7CQ9NUP9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIN7CQ9NUP9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIN7CQ9NUP9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIN7CQ9NUP9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.08■□□□□ 0.81
LIN7CQ9NUP9 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIN7CQ9NUP9 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIN7CQ9NUP9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIN7CQ9NUP9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.07■□□□□ 0.8
LIN7CQ9NUP9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIN7CQ9NUP9 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
LIN7CQ9NUP9 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIN7CQ9NUP9 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIN7CQ9NUP9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIN7CQ9NUP9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.05■□□□□ 0.8
LIN7CQ9NUP9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
LIN7CQ9NUP9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIN7CQ9NUP9 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIN7CQ9NUP9 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIN7CQ9NUP9 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
LIN7CQ9NUP9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LIN7CQ9NUP9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
LIN7CQ9NUP9 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIN7CQ9NUP9 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LIN7CQ9NUP9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIN7CQ9NUP9 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIN7CQ9NUP9 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIN7CQ9NUP9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.03■□□□□ 0.8
LIN7CQ9NUP9 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.03■□□□□ 0.8
LIN7CQ9NUP9 AC010501.1-201ENST00000606270 1962 ntBASIC20.03■□□□□ 0.8
LIN7CQ9NUP9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LIN7CQ9NUP9 AC148477.6-201ENST00000623746 465 ntBASIC20.02■□□□□ 0.8
LIN7CQ9NUP9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIN7CQ9NUP9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.79
LIN7CQ9NUP9 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LIN7CQ9NUP9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIN7CQ9NUP9 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 MIR4449-201ENST00000578365 66 ntBASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIN7CQ9NUP9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIN7CQ9NUP9 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20■□□□□ 0.79
LIN7CQ9NUP9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20■□□□□ 0.79
LIN7CQ9NUP9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIN7CQ9NUP9 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIN7CQ9NUP9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
LIN7CQ9NUP9 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIN7CQ9NUP9 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIN7CQ9NUP9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
LIN7CQ9NUP9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIN7CQ9NUP9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LIN7CQ9NUP9 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIN7CQ9NUP9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIN7CQ9NUP9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIN7CQ9NUP9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIN7CQ9NUP9 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIN7CQ9NUP9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
LIN7CQ9NUP9 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIN7CQ9NUP9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms