Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.12■■□□□ 1.45
PTCD3Q96EY7 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCD3Q96EY7 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD3Q96EY7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PTCD3Q96EY7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
PTCD3Q96EY7 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.11■■□□□ 1.45
PTCD3Q96EY7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 AC008813.1-201ENST00000536597 885 ntBASIC24.1■■□□□ 1.45
PTCD3Q96EY7 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCD3Q96EY7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD3Q96EY7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD3Q96EY7 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD3Q96EY7 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCD3Q96EY7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
PTCD3Q96EY7 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
PTCD3Q96EY7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
PTCD3Q96EY7 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
PTCD3Q96EY7 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
PTCD3Q96EY7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD3Q96EY7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.07■■□□□ 1.44
PTCD3Q96EY7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD3Q96EY7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD3Q96EY7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD3Q96EY7 CR559946.2-201ENST00000623684 991 ntBASIC24.06■■□□□ 1.44
PTCD3Q96EY7 AP004609.3-201ENST00000610705 1884 ntBASIC24.06■■□□□ 1.44
PTCD3Q96EY7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.06■■□□□ 1.44
PTCD3Q96EY7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
PTCD3Q96EY7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD3Q96EY7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD3Q96EY7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
PTCD3Q96EY7 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD3Q96EY7 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD3Q96EY7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.03■■□□□ 1.44
PTCD3Q96EY7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD3Q96EY7 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD3Q96EY7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.02■■□□□ 1.44
PTCD3Q96EY7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD3Q96EY7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
PTCD3Q96EY7 MIR3648-2-201ENST00000581792 180 ntBASIC24.01■■□□□ 1.43
PTCD3Q96EY7 MIR3648-1-201ENST00000615959 180 ntBASIC24.01■■□□□ 1.43
PTCD3Q96EY7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.01■■□□□ 1.43
PTCD3Q96EY7 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
PTCD3Q96EY7 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.01■■□□□ 1.43
PTCD3Q96EY7 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.01■■□□□ 1.43
PTCD3Q96EY7 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD3Q96EY7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD3Q96EY7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD3Q96EY7 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24■■□□□ 1.43
PTCD3Q96EY7 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD3Q96EY7 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD3Q96EY7 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD3Q96EY7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD3Q96EY7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD3Q96EY7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24■■□□□ 1.43
PTCD3Q96EY7 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
PTCD3Q96EY7 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.99■■□□□ 1.43
PTCD3Q96EY7 MIR7108-201ENST00000614319 87 ntBASIC23.99■■□□□ 1.43
PTCD3Q96EY7 AC148477.6-201ENST00000623746 465 ntBASIC23.99■■□□□ 1.43
PTCD3Q96EY7 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD3Q96EY7 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTCD3Q96EY7 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
PTCD3Q96EY7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
PTCD3Q96EY7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTCD3Q96EY7 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTCD3Q96EY7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.97■■□□□ 1.43
PTCD3Q96EY7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
PTCD3Q96EY7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 WHAMMP3-201ENST00000611636 1609 ntBASIC23.96■■□□□ 1.43
PTCD3Q96EY7 MIR219A2-201ENST00000608502 1504 ntBASIC23.96■■□□□ 1.43
PTCD3Q96EY7 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 HLA-V-202ENST00000446817 847 ntBASIC23.96■■□□□ 1.43
PTCD3Q96EY7 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCD3Q96EY7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PTCD3Q96EY7 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.95■■□□□ 1.43
PTCD3Q96EY7 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
PTCD3Q96EY7 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PTCD3Q96EY7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
PTCD3Q96EY7 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PTCD3Q96EY7 AC016575.1-201ENST00000607026 382 ntBASIC23.95■■□□□ 1.42
PTCD3Q96EY7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTCD3Q96EY7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 648.2 ms