Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CKS1BP61024 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CKS1BP61024 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CKS1BP61024 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC16.77■□□□□ 0.28
CKS1BP61024 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CKS1BP61024 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CKS1BP61024 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CKS1BP61024 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CKS1BP61024 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CKS1BP61024 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CKS1BP61024 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CKS1BP61024 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CKS1BP61024 RNF165-205ENST00000588679 2904 ntBASIC16.76■□□□□ 0.27
CKS1BP61024 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CKS1BP61024 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC16.76■□□□□ 0.27
CKS1BP61024 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CKS1BP61024 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CKS1BP61024 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CKS1BP61024 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CKS1BP61024 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CKS1BP61024 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CKS1BP61024 MIR762-201ENST00000390236 83 ntBASIC16.75■□□□□ 0.27
CKS1BP61024 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC16.75■□□□□ 0.27
CKS1BP61024 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CKS1BP61024 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CKS1BP61024 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CKS1BP61024 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CKS1BP61024 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CKS1BP61024 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CKS1BP61024 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC16.74■□□□□ 0.27
CKS1BP61024 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CKS1BP61024 TMEM202-AS1-202ENST00000565181 2325 ntBASIC16.74■□□□□ 0.27
CKS1BP61024 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CKS1BP61024 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CKS1BP61024 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CKS1BP61024 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CKS1BP61024 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CKS1BP61024 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CKS1BP61024 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CKS1BP61024 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CKS1BP61024 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CKS1BP61024 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CKS1BP61024 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CKS1BP61024 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC16.73■□□□□ 0.27
CKS1BP61024 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC16.73■□□□□ 0.27
CKS1BP61024 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CKS1BP61024 CHML-205ENST00000638160 705 ntTSL 3 BASIC16.73■□□□□ 0.27
CKS1BP61024 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
CKS1BP61024 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CKS1BP61024 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC16.73■□□□□ 0.27
CKS1BP61024 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CKS1BP61024 AC136428.2-201ENST00000563187 214 ntBASIC16.72■□□□□ 0.27
CKS1BP61024 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CKS1BP61024 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CKS1BP61024 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CKS1BP61024 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CKS1BP61024 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC16.72■□□□□ 0.27
CKS1BP61024 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CKS1BP61024 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC16.72■□□□□ 0.27
CKS1BP61024 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC16.71■□□□□ 0.27
CKS1BP61024 AC018358.1-201ENST00000631079 1402 ntBASIC16.71■□□□□ 0.27
CKS1BP61024 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC16.71■□□□□ 0.27
CKS1BP61024 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC16.71■□□□□ 0.27
CKS1BP61024 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CKS1BP61024 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.71■□□□□ 0.27
CKS1BP61024 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.71■□□□□ 0.27
CKS1BP61024 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
CKS1BP61024 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CKS1BP61024 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CKS1BP61024 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CKS1BP61024 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CKS1BP61024 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 AL121603.2-201ENST00000557373 2117 ntBASIC16.7■□□□□ 0.26
CKS1BP61024 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS1BP61024 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CKS1BP61024 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CKS1BP61024 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC16.69■□□□□ 0.26
CKS1BP61024 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.69■□□□□ 0.26
CKS1BP61024 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS1BP61024 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CKS1BP61024 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS1BP61024 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CKS1BP61024 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS1BP61024 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms