Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 MIR3665-201ENST00000578708 105 ntBASIC21.64■■□□□ 1.05
LIMS3P0CW19 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.64■■□□□ 1.05
LIMS3P0CW19 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
LIMS3P0CW19 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LIMS3P0CW19 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMS3P0CW19 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
LIMS3P0CW19 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.63■■□□□ 1.05
LIMS3P0CW19 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.63■■□□□ 1.05
LIMS3P0CW19 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMS3P0CW19 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LIMS3P0CW19 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.63■■□□□ 1.05
LIMS3P0CW19 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.63■■□□□ 1.05
LIMS3P0CW19 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LIMS3P0CW19 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIMS3P0CW19 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIMS3P0CW19 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.62■■□□□ 1.05
LIMS3P0CW19 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LIMS3P0CW19 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.62■■□□□ 1.05
LIMS3P0CW19 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.62■■□□□ 1.05
LIMS3P0CW19 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIMS3P0CW19 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LIMS3P0CW19 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIMS3P0CW19 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.61■■□□□ 1.05
LIMS3P0CW19 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.61■■□□□ 1.05
LIMS3P0CW19 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIMS3P0CW19 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIMS3P0CW19 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
LIMS3P0CW19 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LIMS3P0CW19 AC096887.2-201ENST00000623443 1957 ntBASIC21.6■■□□□ 1.05
LIMS3P0CW19 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMS3P0CW19 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMS3P0CW19 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMS3P0CW19 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMS3P0CW19 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMS3P0CW19 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.6■■□□□ 1.05
LIMS3P0CW19 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LIMS3P0CW19 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIMS3P0CW19 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.59■■□□□ 1.05
LIMS3P0CW19 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.59■■□□□ 1.05
LIMS3P0CW19 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIMS3P0CW19 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LIMS3P0CW19 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LIMS3P0CW19 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.59■■□□□ 1.05
LIMS3P0CW19 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
LIMS3P0CW19 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMS3P0CW19 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.58■■□□□ 1.05
LIMS3P0CW19 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LIMS3P0CW19 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMS3P0CW19 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.58■■□□□ 1.04
LIMS3P0CW19 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LIMS3P0CW19 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.04
LIMS3P0CW19 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMS3P0CW19 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMS3P0CW19 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMS3P0CW19 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMS3P0CW19 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
LIMS3P0CW19 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMS3P0CW19 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LIMS3P0CW19 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.57■■□□□ 1.04
LIMS3P0CW19 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
LIMS3P0CW19 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.56■■□□□ 1.04
LIMS3P0CW19 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMS3P0CW19 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
LIMS3P0CW19 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.56■■□□□ 1.04
LIMS3P0CW19 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.56■■□□□ 1.04
LIMS3P0CW19 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMS3P0CW19 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
LIMS3P0CW19 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMS3P0CW19 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMS3P0CW19 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMS3P0CW19 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LIMS3P0CW19 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMS3P0CW19 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMS3P0CW19 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMS3P0CW19 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMS3P0CW19 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMS3P0CW19 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
LIMS3P0CW19 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMS3P0CW19 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMS3P0CW19 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMS3P0CW19 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMS3P0CW19 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMS3P0CW19 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMS3P0CW19 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMS3P0CW19 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
LIMS3P0CW19 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMS3P0CW19 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.52■■□□□ 1.04
LIMS3P0CW19 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.52■■□□□ 1.04
LIMS3P0CW19 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMS3P0CW19 AC087741.3-201ENST00000624270 1347 ntBASIC21.52■■□□□ 1.03
LIMS3P0CW19 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.51■■□□□ 1.03
LIMS3P0CW19 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMS3P0CW19 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms