Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 DUX4L11-201ENST00000611504 1267 ntBASIC21.71■■□□□ 1.07
HLA-DPB1P04440 DUX4L12-201ENST00000614593 1267 ntBASIC21.71■■□□□ 1.07
HLA-DPB1P04440 DUX4L14-201ENST00000621227 1267 ntBASIC21.71■■□□□ 1.07
HLA-DPB1P04440 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DPB1P04440 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DPB1P04440 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DPB1P04440 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DPB1P04440 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HLA-DPB1P04440 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DPB1P04440 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DPB1P04440 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.69■■□□□ 1.06
HLA-DPB1P04440 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.69■■□□□ 1.06
HLA-DPB1P04440 AC142381.3-201ENST00000568208 1670 ntBASIC21.69■■□□□ 1.06
HLA-DPB1P04440 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DPB1P04440 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DPB1P04440 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DPB1P04440 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DPB1P04440 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.68■■□□□ 1.06
HLA-DPB1P04440 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.68■■□□□ 1.06
HLA-DPB1P04440 AC110285.7-201ENST00000624417 1536 ntBASIC21.68■■□□□ 1.06
HLA-DPB1P04440 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HLA-DPB1P04440 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.67■■□□□ 1.06
HLA-DPB1P04440 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
HLA-DPB1P04440 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DPB1P04440 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DPB1P04440 MIR7108-201ENST00000614319 87 ntBASIC21.66■■□□□ 1.06
HLA-DPB1P04440 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
HLA-DPB1P04440 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DPB1P04440 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.66■■□□□ 1.06
HLA-DPB1P04440 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L13-201ENST00000554103 1267 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L15-201ENST00000611059 1267 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L23-201ENST00000615195 1269 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L24-201ENST00000617576 1269 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L22-201ENST00000618238 1269 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L20-201ENST00000619712 1269 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L21-201ENST00000622058 1269 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L10-201ENST00000622460 1267 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 DUX4L25-201ENST00000624915 1269 ntBASIC21.65■■□□□ 1.06
HLA-DPB1P04440 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DPB1P04440 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DPB1P04440 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DPB1P04440 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.64■■□□□ 1.05
HLA-DPB1P04440 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.64■■□□□ 1.05
HLA-DPB1P04440 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
HLA-DPB1P04440 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
HLA-DPB1P04440 AC010501.1-201ENST00000606270 1962 ntBASIC21.63■■□□□ 1.05
HLA-DPB1P04440 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DPB1P04440 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DPB1P04440 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DPB1P04440 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
HLA-DPB1P04440 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
HLA-DPB1P04440 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DPB1P04440 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.59■■□□□ 1.05
HLA-DPB1P04440 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DPB1P04440 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DPB1P04440 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DPB1P04440 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DPB1P04440 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
HLA-DPB1P04440 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms