Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 MYCLP1-201ENST00000372451 1075 ntBASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 AC004706.3-202ENST00000621574 984 ntBASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 AC073621.1-201ENST00000392730 636 ntBASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 AC040169.1-201ENST00000565382 521 ntBASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 MIR3687-2-201ENST00000577708 61 ntBASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 MIR3687-1-201ENST00000614492 61 ntBASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.22■□□□□ 0.83
CTDP1Q9Y5B0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 PGAM5P1-201ENST00000518923 814 ntBASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 STK25P1-201ENST00000585406 838 ntBASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 FLJ13224-201ENST00000313737 1514 ntBASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTDP1Q9Y5B0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
CTDP1Q9Y5B0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 ELK2BP-201ENST00000415014 1224 ntBASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 AC002558.1-201ENST00000488906 803 ntBASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.2■□□□□ 0.82
CTDP1Q9Y5B0 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms