Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 TSPY15P-201ENST00000457163 923 ntBASIC15.53■□□□□ 0.08
MMP28Q9H239 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 AC116562.2-201ENST00000507042 360 ntBASIC15.53■□□□□ 0.08
MMP28Q9H239 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC15.53■□□□□ 0.08
MMP28Q9H239 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC15.53■□□□□ 0.08
MMP28Q9H239 DGCR10-201ENST00000609839 495 ntBASIC15.53■□□□□ 0.08
MMP28Q9H239 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.53■□□□□ 0.08
MMP28Q9H239 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.53■□□□□ 0.08
MMP28Q9H239 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
MMP28Q9H239 KRT8P11-201ENST00000409686 1436 ntBASIC15.52■□□□□ 0.08
MMP28Q9H239 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.52■□□□□ 0.08
MMP28Q9H239 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
MMP28Q9H239 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.52■□□□□ 0.08
MMP28Q9H239 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.52■□□□□ 0.08
MMP28Q9H239 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
MMP28Q9H239 AC060834.1-201ENST00000443027 2032 ntBASIC15.52■□□□□ 0.08
MMP28Q9H239 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.52■□□□□ 0.08
MMP28Q9H239 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
MMP28Q9H239 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 MESTP1-201ENST00000404287 994 ntBASIC15.52■□□□□ 0.08
MMP28Q9H239 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC15.52■□□□□ 0.08
MMP28Q9H239 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.52■□□□□ 0.08
MMP28Q9H239 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.52■□□□□ 0.08
MMP28Q9H239 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.52■□□□□ 0.08
MMP28Q9H239 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15.52■□□□□ 0.08
MMP28Q9H239 AC133561.5-201ENST00000635547 218 ntBASIC15.52■□□□□ 0.08
MMP28Q9H239 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MMP28Q9H239 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.52■□□□□ 0.08
MMP28Q9H239 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.52■□□□□ 0.07
MMP28Q9H239 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MMP28Q9H239 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.52■□□□□ 0.07
MMP28Q9H239 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
MMP28Q9H239 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MMP28Q9H239 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
MMP28Q9H239 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
MMP28Q9H239 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
MMP28Q9H239 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
MMP28Q9H239 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MMP28Q9H239 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
MMP28Q9H239 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.51■□□□□ 0.07
MMP28Q9H239 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC15.51■□□□□ 0.07
MMP28Q9H239 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
MMP28Q9H239 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC15.51■□□□□ 0.07
MMP28Q9H239 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.51■□□□□ 0.07
MMP28Q9H239 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 REXO1L10P-201ENST00000615707 1290 ntBASIC15.51■□□□□ 0.07
MMP28Q9H239 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 AC006449.5-201ENST00000610658 2098 ntBASIC15.51■□□□□ 0.07
MMP28Q9H239 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
MMP28Q9H239 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
MMP28Q9H239 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MMP28Q9H239 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
MMP28Q9H239 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC15.5■□□□□ 0.07
MMP28Q9H239 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms