Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HPS3Q969F9 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 AC104819.1-201ENST00000504587 486 ntBASIC19.41■□□□□ 0.7
HPS3Q969F9 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.41■□□□□ 0.7
HPS3Q969F9 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.41■□□□□ 0.7
HPS3Q969F9 AC099336.1-202ENST00000602961 463 ntBASIC19.41■□□□□ 0.7
HPS3Q969F9 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.41■□□□□ 0.7
HPS3Q969F9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HPS3Q969F9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.41■□□□□ 0.7
HPS3Q969F9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HPS3Q969F9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HPS3Q969F9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.4■□□□□ 0.7
HPS3Q969F9 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HPS3Q969F9 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 INTS4P1-201ENST00000438455 1935 ntBASIC19.4■□□□□ 0.7
HPS3Q969F9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.4■□□□□ 0.7
HPS3Q969F9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.4■□□□□ 0.7
HPS3Q969F9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HPS3Q969F9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
HPS3Q969F9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HPS3Q969F9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HPS3Q969F9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
HPS3Q969F9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
HPS3Q969F9 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
HPS3Q969F9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.39■□□□□ 0.69
HPS3Q969F9 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.39■□□□□ 0.69
HPS3Q969F9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.39■□□□□ 0.69
HPS3Q969F9 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.39■□□□□ 0.69
HPS3Q969F9 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.39■□□□□ 0.69
HPS3Q969F9 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.39■□□□□ 0.69
HPS3Q969F9 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
HPS3Q969F9 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HPS3Q969F9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.39■□□□□ 0.69
HPS3Q969F9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.39■□□□□ 0.69
HPS3Q969F9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HPS3Q969F9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
HPS3Q969F9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
HPS3Q969F9 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.38■□□□□ 0.69
HPS3Q969F9 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.38■□□□□ 0.69
HPS3Q969F9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.38■□□□□ 0.69
HPS3Q969F9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.38■□□□□ 0.69
HPS3Q969F9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.38■□□□□ 0.69
HPS3Q969F9 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HPS3Q969F9 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.38■□□□□ 0.69
HPS3Q969F9 AC012615.1-201ENST00000565797 1299 ntBASIC19.38■□□□□ 0.69
HPS3Q969F9 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms