Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 GRK6P1-201ENST00000400595 1711 ntBASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 AL589743.5-201ENST00000616611 1050 ntBASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 SBF1P1-201ENST00000444527 5631 ntBASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC28AQ8IWP9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC28AQ8IWP9 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC28AQ8IWP9 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms