Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.64■□□□□ 0.9
SYNE3Q6ZMZ3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.64■□□□□ 0.9
SYNE3Q6ZMZ3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SYNE3Q6ZMZ3 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 AC002558.1-201ENST00000488906 803 ntBASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 SIRPAP1-201ENST00000448467 1770 ntBASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.64■□□□□ 0.89
SYNE3Q6ZMZ3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 RCN1P2-201ENST00000398357 915 ntBASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 AC111152.3-201ENST00000569699 673 ntBASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 AC114341.1-201ENST00000618070 349 ntBASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE3Q6ZMZ3 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 NUS1P2-201ENST00000417358 873 ntBASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 NUS1P1-201ENST00000446295 882 ntBASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 AC109462.3-201ENST00000573934 613 ntBASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 AC138894.3-201ENST00000603787 634 ntBASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE3Q6ZMZ3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE3Q6ZMZ3 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms