Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 FOSL1P1-201ENST00000511041 816 ntBASIC18.92■□□□□ 0.62
KRT39Q6A163 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.92■□□□□ 0.62
KRT39Q6A163 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.92■□□□□ 0.62
KRT39Q6A163 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.92■□□□□ 0.62
KRT39Q6A163 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.91■□□□□ 0.62
KRT39Q6A163 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 AC132938.5-201ENST00000624980 1813 ntBASIC18.91■□□□□ 0.62
KRT39Q6A163 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 AC003669.1-201ENST00000334569 611 ntBASIC18.91■□□□□ 0.62
KRT39Q6A163 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.91■□□□□ 0.62
KRT39Q6A163 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
KRT39Q6A163 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.91■□□□□ 0.62
KRT39Q6A163 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.91■□□□□ 0.62
KRT39Q6A163 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.91■□□□□ 0.62
KRT39Q6A163 AL591684.3-201ENST00000605187 298 ntBASIC18.91■□□□□ 0.62
KRT39Q6A163 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.91■□□□□ 0.62
KRT39Q6A163 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
KRT39Q6A163 AC046185.3-201ENST00000623228 1824 ntBASIC18.9■□□□□ 0.62
KRT39Q6A163 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.9■□□□□ 0.62
KRT39Q6A163 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
KRT39Q6A163 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 PMPCAP1-201ENST00000508114 1576 ntBASIC18.9■□□□□ 0.62
KRT39Q6A163 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
KRT39Q6A163 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
KRT39Q6A163 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.9■□□□□ 0.62
KRT39Q6A163 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.9■□□□□ 0.62
KRT39Q6A163 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.9■□□□□ 0.62
KRT39Q6A163 STK19B-204ENST00000512515 211 ntBASIC18.9■□□□□ 0.62
KRT39Q6A163 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.9■□□□□ 0.62
KRT39Q6A163 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.9■□□□□ 0.62
KRT39Q6A163 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
KRT39Q6A163 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.9■□□□□ 0.62
KRT39Q6A163 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.9■□□□□ 0.62
KRT39Q6A163 AC073592.5-201ENST00000624854 528 ntBASIC18.9■□□□□ 0.62
KRT39Q6A163 AP000867.4-201ENST00000641616 219 ntBASIC18.9■□□□□ 0.62
KRT39Q6A163 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
KRT39Q6A163 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.9■□□□□ 0.62
KRT39Q6A163 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
KRT39Q6A163 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
KRT39Q6A163 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.9■□□□□ 0.62
KRT39Q6A163 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.9■□□□□ 0.62
KRT39Q6A163 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
KRT39Q6A163 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
KRT39Q6A163 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
KRT39Q6A163 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
KRT39Q6A163 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
KRT39Q6A163 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
KRT39Q6A163 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
KRT39Q6A163 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
KRT39Q6A163 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.89■□□□□ 0.61
KRT39Q6A163 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
KRT39Q6A163 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
KRT39Q6A163 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
KRT39Q6A163 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
KRT39Q6A163 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.89■□□□□ 0.61
KRT39Q6A163 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
KRT39Q6A163 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 163.6 ms