Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF43Q68DV7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
RNF43Q68DV7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
RNF43Q68DV7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNF43Q68DV7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNF43Q68DV7 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNF43Q68DV7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNF43Q68DV7 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 NUS1P2-201ENST00000417358 873 ntBASIC18.39■□□□□ 0.53
RNF43Q68DV7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 KRT18P58-201ENST00000527480 1120 ntBASIC18.39■□□□□ 0.53
RNF43Q68DV7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF43Q68DV7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 INTS4P1-201ENST00000438455 1935 ntBASIC18.39■□□□□ 0.53
RNF43Q68DV7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RNF43Q68DV7 FLJ13224-201ENST00000313737 1514 ntBASIC18.39■□□□□ 0.53
RNF43Q68DV7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 RCN1P2-201ENST00000398357 915 ntBASIC18.38■□□□□ 0.53
RNF43Q68DV7 AC096633.1-201ENST00000422446 749 ntBASIC18.38■□□□□ 0.53
RNF43Q68DV7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 AC096582.2-201ENST00000510860 516 ntBASIC18.38■□□□□ 0.53
RNF43Q68DV7 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 REXO1L9P-201ENST00000604264 2108 ntBASIC18.38■□□□□ 0.53
RNF43Q68DV7 HCG11-201ENST00000411553 5696 ntBASIC18.38■□□□□ 0.53
RNF43Q68DV7 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF43Q68DV7 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF43Q68DV7 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms