Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 POM121L3P-201ENST00000419331 1163 ntBASIC21.16■□□□□ 0.98
VPS53Q5VIR6 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 AC019129.2-201ENST00000609837 1235 ntBASIC21.16■□□□□ 0.98
VPS53Q5VIR6 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 AC108860.2-201ENST00000562760 2183 ntBASIC21.16■□□□□ 0.98
VPS53Q5VIR6 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS53Q5VIR6 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
VPS53Q5VIR6 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS53Q5VIR6 AL138688.1-201ENST00000624851 1594 ntBASIC21.14■□□□□ 0.98
VPS53Q5VIR6 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
VPS53Q5VIR6 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VPS53Q5VIR6 BX276092.7-203ENST00000637198 1536 ntBASIC21.14■□□□□ 0.98
VPS53Q5VIR6 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.14■□□□□ 0.98
VPS53Q5VIR6 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC21.14■□□□□ 0.98
VPS53Q5VIR6 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS53Q5VIR6 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
VPS53Q5VIR6 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 FAM220CP-201ENST00000395253 831 ntBASIC21.14■□□□□ 0.97
VPS53Q5VIR6 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS53Q5VIR6 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 FZD10-202ENST00000539839 3282 ntBASIC21.13■□□□□ 0.97
VPS53Q5VIR6 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 PC-208ENST00000529047 1607 ntTSL 3 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 AL049757.1-201ENST00000616842 1596 ntBASIC21.13■□□□□ 0.97
VPS53Q5VIR6 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
VPS53Q5VIR6 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms