Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SOX4Q06945 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.66■□□□□ 0.58
SOX4Q06945 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.66■□□□□ 0.58
SOX4Q06945 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
SOX4Q06945 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 ACTG1P4-201ENST00000425123 1122 ntBASIC18.66■□□□□ 0.58
SOX4Q06945 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 KRT18P2-201ENST00000447938 1258 ntBASIC18.66■□□□□ 0.58
SOX4Q06945 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.66■□□□□ 0.58
SOX4Q06945 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.66■□□□□ 0.58
SOX4Q06945 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SOX4Q06945 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX4Q06945 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX4Q06945 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SOX4Q06945 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.65■□□□□ 0.58
SOX4Q06945 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.65■□□□□ 0.58
SOX4Q06945 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SOX4Q06945 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SOX4Q06945 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.65■□□□□ 0.58
SOX4Q06945 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX4Q06945 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.65■□□□□ 0.58
SOX4Q06945 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX4Q06945 AC064836.3-201ENST00000607928 673 ntBASIC18.65■□□□□ 0.58
SOX4Q06945 AC006538.3-201ENST00000612495 578 ntBASIC18.65■□□□□ 0.58
SOX4Q06945 AC004790.2-201ENST00000623588 572 ntBASIC18.65■□□□□ 0.58
SOX4Q06945 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.65■□□□□ 0.58
SOX4Q06945 AC133963.1-201ENST00000504166 1679 ntBASIC18.65■□□□□ 0.58
SOX4Q06945 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX4Q06945 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 AL590787.1-201ENST00000568856 1315 ntBASIC18.65■□□□□ 0.58
SOX4Q06945 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SOX4Q06945 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX4Q06945 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX4Q06945 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX4Q06945 AC018470.1-201ENST00000624790 3129 ntBASIC18.65■□□□□ 0.58
SOX4Q06945 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SOX4Q06945 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SOX4Q06945 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.64■□□□□ 0.58
SOX4Q06945 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SOX4Q06945 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
SOX4Q06945 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.64■□□□□ 0.57
SOX4Q06945 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
SOX4Q06945 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.64■□□□□ 0.57
SOX4Q06945 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.64■□□□□ 0.57
SOX4Q06945 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.64■□□□□ 0.57
SOX4Q06945 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.64■□□□□ 0.57
SOX4Q06945 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.64■□□□□ 0.57
SOX4Q06945 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms