Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.87■■□□□ 1.09
RFC4P35249 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
RFC4P35249 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.87■■□□□ 1.09
RFC4P35249 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.87■■□□□ 1.09
RFC4P35249 SLC25A6P2-201ENST00000497974 877 ntBASIC21.87■■□□□ 1.09
RFC4P35249 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
RFC4P35249 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.87■■□□□ 1.09
RFC4P35249 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.87■■□□□ 1.09
RFC4P35249 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.87■■□□□ 1.09
RFC4P35249 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFC4P35249 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.87■■□□□ 1.09
RFC4P35249 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.87■■□□□ 1.09
RFC4P35249 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
RFC4P35249 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.86■■□□□ 1.09
RFC4P35249 AC063926.2-201ENST00000623766 1308 ntBASIC21.86■■□□□ 1.09
RFC4P35249 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.86■■□□□ 1.09
RFC4P35249 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
RFC4P35249 AC140658.5-201ENST00000438532 169 ntBASIC21.86■■□□□ 1.09
RFC4P35249 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.86■■□□□ 1.09
RFC4P35249 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.86■■□□□ 1.09
RFC4P35249 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.86■■□□□ 1.09
RFC4P35249 AC051619.7-201ENST00000568314 623 ntBASIC21.86■■□□□ 1.09
RFC4P35249 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.86■■□□□ 1.09
RFC4P35249 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.86■■□□□ 1.09
RFC4P35249 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.86■■□□□ 1.09
RFC4P35249 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.86■■□□□ 1.09
RFC4P35249 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.86■■□□□ 1.09
RFC4P35249 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFC4P35249 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.85■■□□□ 1.09
RFC4P35249 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.85■■□□□ 1.09
RFC4P35249 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.85■■□□□ 1.09
RFC4P35249 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 CROCCP3-202ENST00000420820 1947 ntBASIC21.85■■□□□ 1.09
RFC4P35249 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.85■■□□□ 1.09
RFC4P35249 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.85■■□□□ 1.09
RFC4P35249 AC236430.1-201ENST00000402231 743 ntBASIC21.85■■□□□ 1.09
RFC4P35249 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.85■■□□□ 1.09
RFC4P35249 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 AC079140.1-201ENST00000508039 487 ntBASIC21.85■■□□□ 1.09
RFC4P35249 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.85■■□□□ 1.09
RFC4P35249 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.85■■□□□ 1.09
RFC4P35249 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
RFC4P35249 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC4P35249 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.85■■□□□ 1.09
RFC4P35249 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.84■■□□□ 1.09
RFC4P35249 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RFC4P35249 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.84■■□□□ 1.09
RFC4P35249 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFC4P35249 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RFC4P35249 TUBB3P1-201ENST00000405796 1332 ntBASIC21.84■■□□□ 1.09
RFC4P35249 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFC4P35249 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.84■■□□□ 1.09
RFC4P35249 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
RFC4P35249 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.84■■□□□ 1.09
RFC4P35249 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RFC4P35249 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFC4P35249 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFC4P35249 MIR943-201ENST00000401286 94 ntBASIC21.84■■□□□ 1.09
RFC4P35249 TFAMP1-201ENST00000412727 736 ntBASIC21.84■■□□□ 1.09
RFC4P35249 KRT18P32-201ENST00000424695 1287 ntBASIC21.84■■□□□ 1.09
RFC4P35249 AC087163.2-201ENST00000457299 853 ntBASIC21.84■■□□□ 1.09
RFC4P35249 RN7SL589P-201ENST00000481268 310 ntBASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms