Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PDGFAP04085 BX005266.1-201ENST00000473402 457 ntBASIC16.41■□□□□ 0.22
PDGFAP04085 RNA5SP416-201ENST00000516838 111 ntBASIC16.41■□□□□ 0.22
PDGFAP04085 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PDGFAP04085 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.41■□□□□ 0.22
PDGFAP04085 LINC02084-201ENST00000606069 1096 ntBASIC16.41■□□□□ 0.22
PDGFAP04085 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PDGFAP04085 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PDGFAP04085 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.41■□□□□ 0.22
PDGFAP04085 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PDGFAP04085 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PDGFAP04085 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.41■□□□□ 0.22
PDGFAP04085 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.41■□□□□ 0.22
PDGFAP04085 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PDGFAP04085 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.41■□□□□ 0.22
PDGFAP04085 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.4■□□□□ 0.22
PDGFAP04085 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.4■□□□□ 0.22
PDGFAP04085 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.4■□□□□ 0.22
PDGFAP04085 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
PDGFAP04085 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.4■□□□□ 0.22
PDGFAP04085 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.4■□□□□ 0.22
PDGFAP04085 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.4■□□□□ 0.22
PDGFAP04085 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFAP04085 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.4■□□□□ 0.22
PDGFAP04085 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.39■□□□□ 0.21
PDGFAP04085 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 BICD1-207ENST00000551848 1962 ntBASIC16.39■□□□□ 0.21
PDGFAP04085 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 LAGE3P1-201ENST00000425356 484 ntBASIC16.39■□□□□ 0.21
PDGFAP04085 AC004832.2-201ENST00000426397 482 ntBASIC16.39■□□□□ 0.21
PDGFAP04085 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.39■□□□□ 0.21
PDGFAP04085 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.39■□□□□ 0.21
PDGFAP04085 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
PDGFAP04085 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.39■□□□□ 0.21
PDGFAP04085 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.39■□□□□ 0.21
PDGFAP04085 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFAP04085 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PDGFAP04085 AC090164.3-201ENST00000610780 2143 ntBASIC16.39■□□□□ 0.21
PDGFAP04085 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFAP04085 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFAP04085 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PDGFAP04085 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFAP04085 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.38■□□□□ 0.21
PDGFAP04085 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
PDGFAP04085 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.38■□□□□ 0.21
PDGFAP04085 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms