Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PDGFBP01127 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.48■□□□□ 0.39
PDGFBP01127 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.48■□□□□ 0.39
PDGFBP01127 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
PDGFBP01127 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.48■□□□□ 0.39
PDGFBP01127 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.48■□□□□ 0.39
PDGFBP01127 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PDGFBP01127 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.48■□□□□ 0.39
PDGFBP01127 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.48■□□□□ 0.39
PDGFBP01127 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.48■□□□□ 0.39
PDGFBP01127 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.48■□□□□ 0.39
PDGFBP01127 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDGFBP01127 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.48■□□□□ 0.39
PDGFBP01127 AKAP8P1-201ENST00000434743 1349 ntBASIC17.47■□□□□ 0.39
PDGFBP01127 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
PDGFBP01127 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.47■□□□□ 0.39
PDGFBP01127 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
PDGFBP01127 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.47■□□□□ 0.39
PDGFBP01127 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.47■□□□□ 0.39
PDGFBP01127 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.47■□□□□ 0.39
PDGFBP01127 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.47■□□□□ 0.39
PDGFBP01127 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.47■□□□□ 0.39
PDGFBP01127 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.47■□□□□ 0.39
PDGFBP01127 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.47■□□□□ 0.39
PDGFBP01127 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.47■□□□□ 0.39
PDGFBP01127 AC010336.2-201ENST00000564226 506 ntBASIC17.47■□□□□ 0.39
PDGFBP01127 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.47■□□□□ 0.39
PDGFBP01127 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.47■□□□□ 0.39
PDGFBP01127 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.47■□□□□ 0.39
PDGFBP01127 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PDGFBP01127 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
PDGFBP01127 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
PDGFBP01127 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.47■□□□□ 0.39
PDGFBP01127 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PDGFBP01127 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDGFBP01127 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.47■□□□□ 0.39
PDGFBP01127 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDGFBP01127 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PDGFBP01127 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.46■□□□□ 0.39
PDGFBP01127 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDGFBP01127 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDGFBP01127 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDGFBP01127 AC241585.1-201ENST00000433527 519 ntBASIC17.46■□□□□ 0.39
PDGFBP01127 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
PDGFBP01127 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.46■□□□□ 0.39
PDGFBP01127 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDGFBP01127 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.46■□□□□ 0.39
PDGFBP01127 AC004233.3-201ENST00000607794 1269 ntBASIC17.46■□□□□ 0.39
PDGFBP01127 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PDGFBP01127 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PDGFBP01127 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PDGFBP01127 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDGFBP01127 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDGFBP01127 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PDGFBP01127 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PDGFBP01127 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.46■□□□□ 0.38
PDGFBP01127 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFBP01127 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFBP01127 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PDGFBP01127 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFBP01127 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 ACTG1P4-201ENST00000425123 1122 ntBASIC17.45■□□□□ 0.38
PDGFBP01127 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFBP01127 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.45■□□□□ 0.38
PDGFBP01127 AC087163.2-201ENST00000457299 853 ntBASIC17.45■□□□□ 0.38
PDGFBP01127 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFBP01127 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFBP01127 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFBP01127 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFBP01127 AC009118.2-201ENST00000613275 655 ntBASIC17.45■□□□□ 0.38
PDGFBP01127 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFBP01127 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFBP01127 CU639417.3-201ENST00000624240 1404 ntBASIC17.45■□□□□ 0.38
PDGFBP01127 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFBP01127 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms