Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.56■□□□□ 0.4
SHOX2O60902 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SHOX2O60902 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 HLA-A-202ENST00000376806 1854 ntBASIC17.56■□□□□ 0.4
SHOX2O60902 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.56■□□□□ 0.4
SHOX2O60902 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.56■□□□□ 0.4
SHOX2O60902 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
SHOX2O60902 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.55■□□□□ 0.4
SHOX2O60902 AC069152.1-201ENST00000438030 544 ntBASIC17.55■□□□□ 0.4
SHOX2O60902 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.55■□□□□ 0.4
SHOX2O60902 UNC93B4-201ENST00000505679 747 ntBASIC17.55■□□□□ 0.4
SHOX2O60902 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 AC092666.2-201ENST00000613287 246 ntBASIC17.55■□□□□ 0.4
SHOX2O60902 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SHOX2O60902 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SHOX2O60902 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.55■□□□□ 0.4
SHOX2O60902 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SHOX2O60902 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SHOX2O60902 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SHOX2O60902 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHOX2O60902 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.54■□□□□ 0.4
SHOX2O60902 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.54■□□□□ 0.4
SHOX2O60902 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SHOX2O60902 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SHOX2O60902 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 AC004951.3-201ENST00000418645 1148 ntBASIC17.54■□□□□ 0.4
SHOX2O60902 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.54■□□□□ 0.4
SHOX2O60902 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.54■□□□□ 0.4
SHOX2O60902 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 PRKY-204ENST00000533551 1019 ntBASIC17.54■□□□□ 0.4
SHOX2O60902 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SHOX2O60902 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 MIR3180-5-201ENST00000583743 153 ntBASIC17.54■□□□□ 0.4
SHOX2O60902 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 AC133041.1-202ENST00000642053 222 ntBASIC17.54■□□□□ 0.4
SHOX2O60902 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 AC022532.1-201ENST00000624563 1728 ntBASIC17.54■□□□□ 0.4
SHOX2O60902 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.54■□□□□ 0.4
SHOX2O60902 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.54■□□□□ 0.4
SHOX2O60902 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHOX2O60902 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.53■□□□□ 0.4
SHOX2O60902 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.53■□□□□ 0.4
SHOX2O60902 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 TNRC18P2-201ENST00000417666 2714 ntBASIC17.53■□□□□ 0.4
SHOX2O60902 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.53■□□□□ 0.4
SHOX2O60902 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms