Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 KRT223P-202ENST00000449164 1292 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC099548.2-209ENST00000480264 625 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AL161645.1-201ENST00000622716 1255 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 AL023806.1-201ENST00000603994 1649 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC234783.1-201ENST00000441761 496 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 ESPNP-201ENST00000270691 2015 ntBASIC13.42□□□□□ -0.26
COL6A5A8TX70 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 SLC7A15P-201ENST00000424028 1363 ntBASIC13.42□□□□□ -0.26
COL6A5A8TX70 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 ACTG1P4-201ENST00000425123 1122 ntBASIC13.42□□□□□ -0.26
COL6A5A8TX70 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 AC009336.1-201ENST00000608941 1553 ntBASIC13.42□□□□□ -0.26
COL6A5A8TX70 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.42□□□□□ -0.26
COL6A5A8TX70 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.42□□□□□ -0.26
COL6A5A8TX70 AC011495.1-201ENST00000498085 584 ntBASIC13.42□□□□□ -0.26
COL6A5A8TX70 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A5A8TX70 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A5A8TX70 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms