Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 AC007967.3-201ENST00000434308 558 ntBASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 AC112907.2-201ENST00000448639 330 ntBASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 Z83836.1-201ENST00000624605 1642 ntBASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMA1Q9UHB6 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 MYCLP1-201ENST00000372451 1075 ntBASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 RNF152P1-201ENST00000397754 604 ntBASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 SPDYE13P-201ENST00000445314 798 ntBASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 AC133561.5-201ENST00000635547 218 ntBASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMA1Q9UHB6 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMA1Q9UHB6 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMA1Q9UHB6 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMA1Q9UHB6 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.14■□□□□ 0.66
LIMA1Q9UHB6 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
LIMA1Q9UHB6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.14■□□□□ 0.66
LIMA1Q9UHB6 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMA1Q9UHB6 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMA1Q9UHB6 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms