Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 IFNL4P1-201ENST00000607083 540 ntBASIC18.7■□□□□ 0.58
CISHQ9NSE2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 AC141586.5-201ENST00000624546 2050 ntBASIC18.7■□□□□ 0.58
CISHQ9NSE2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 LETM1P2-201ENST00000597330 2178 ntBASIC18.69■□□□□ 0.58
CISHQ9NSE2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 AC139713.2-201ENST00000641328 2723 ntBASIC18.69■□□□□ 0.58
CISHQ9NSE2 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 KLF4P1-201ENST00000412782 1185 ntBASIC18.69■□□□□ 0.58
CISHQ9NSE2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 STK19B-204ENST00000512515 211 ntBASIC18.69■□□□□ 0.58
CISHQ9NSE2 AC106795.1-205ENST00000512851 1056 ntBASIC18.69■□□□□ 0.58
CISHQ9NSE2 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 LINC01711-201ENST00000598340 967 ntBASIC18.69■□□□□ 0.58
CISHQ9NSE2 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 CROCCP2-202ENST00000412962 2773 ntBASIC18.69■□□□□ 0.58
CISHQ9NSE2 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.69■□□□□ 0.58
CISHQ9NSE2 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CISHQ9NSE2 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 AC009336.1-201ENST00000608941 1553 ntBASIC18.68■□□□□ 0.58
CISHQ9NSE2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 AC046185.3-201ENST00000623228 1824 ntBASIC18.68■□□□□ 0.58
CISHQ9NSE2 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 AKR1C7P-201ENST00000305623 895 ntBASIC18.68■□□□□ 0.58
CISHQ9NSE2 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 REXO1L6P-202ENST00000619970 1078 ntBASIC18.68■□□□□ 0.58
CISHQ9NSE2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CISHQ9NSE2 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.68■□□□□ 0.58
CISHQ9NSE2 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms