Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 CRYGEP-201ENST00000412192 528 ntBASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 AL805961.1-202ENST00000641562 540 ntBASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 AC092865.6-201ENST00000642101 219 ntBASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PAAF1Q9BRP4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PAAF1Q9BRP4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PAAF1Q9BRP4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PAAF1Q9BRP4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PAAF1Q9BRP4 AC006116.8-202ENST00000587620 1550 ntBASIC18.64■□□□□ 0.58
PAAF1Q9BRP4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 AL135999.2-201ENST00000622438 1686 ntBASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 IGLL3P-201ENST00000412472 434 ntBASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 AC004832.2-201ENST00000426397 482 ntBASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 VN2R19P-201ENST00000442399 1052 ntBASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 HCG4B-203ENST00000450128 991 ntBASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 OR7E47P-204ENST00000575924 449 ntBASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PAAF1Q9BRP4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 AC046185.3-201ENST00000623228 1824 ntBASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 LINC00304-203ENST00000565008 1864 ntBASIC18.63■□□□□ 0.57
PAAF1Q9BRP4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 AC002347.1-201ENST00000569543 541 ntBASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.62■□□□□ 0.57
PAAF1Q9BRP4 AL691403.2-201ENST00000618460 490 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms