Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CPNE1Q99829 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPNE1Q99829 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.56■□□□□ 0.4
CPNE1Q99829 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CPNE1Q99829 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPNE1Q99829 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPNE1Q99829 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CPNE1Q99829 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.56■□□□□ 0.4
CPNE1Q99829 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CPNE1Q99829 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPNE1Q99829 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.56■□□□□ 0.4
CPNE1Q99829 AC124067.4-201ENST00000519691 2379 ntBASIC17.55■□□□□ 0.4
CPNE1Q99829 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
CPNE1Q99829 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CPNE1Q99829 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CPNE1Q99829 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
CPNE1Q99829 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.55■□□□□ 0.4
CPNE1Q99829 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.55■□□□□ 0.4
CPNE1Q99829 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 AC112907.2-201ENST00000448639 330 ntBASIC17.55■□□□□ 0.4
CPNE1Q99829 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.55■□□□□ 0.4
CPNE1Q99829 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.55■□□□□ 0.4
CPNE1Q99829 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.55■□□□□ 0.4
CPNE1Q99829 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CPNE1Q99829 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.55■□□□□ 0.4
CPNE1Q99829 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
CPNE1Q99829 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CPNE1Q99829 HYMAI.1-201ENST00000620949 238 ntBASIC17.55■□□□□ 0.4
CPNE1Q99829 AC073912.3-201ENST00000624414 853 ntBASIC17.55■□□□□ 0.4
CPNE1Q99829 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 AC060834.1-201ENST00000443027 2032 ntBASIC17.55■□□□□ 0.4
CPNE1Q99829 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.55■□□□□ 0.4
CPNE1Q99829 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CPNE1Q99829 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE1Q99829 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CPNE1Q99829 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 AC010460.3-201ENST00000511359 1579 ntBASIC17.54■□□□□ 0.4
CPNE1Q99829 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 AC005521.1-201ENST00000393351 872 ntBASIC17.54■□□□□ 0.4
CPNE1Q99829 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.54■□□□□ 0.4
CPNE1Q99829 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 VENTXP5-201ENST00000523979 775 ntBASIC17.54■□□□□ 0.4
CPNE1Q99829 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.54■□□□□ 0.4
CPNE1Q99829 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 Z83836.1-201ENST00000624605 1642 ntBASIC17.54■□□□□ 0.4
CPNE1Q99829 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CPNE1Q99829 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.54■□□□□ 0.4
CPNE1Q99829 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE1Q99829 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CPNE1Q99829 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CPNE1Q99829 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE1Q99829 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.53■□□□□ 0.4
CPNE1Q99829 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms