Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX2Q99626 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.13■□□□□ 0.49
CDX2Q99626 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.13■□□□□ 0.49
CDX2Q99626 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 AL009183.1-201ENST00000603760 355 ntBASIC18.13■□□□□ 0.49
CDX2Q99626 COX11-210ENST00000639671 696 ntBASIC18.13■□□□□ 0.49
CDX2Q99626 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CDX2Q99626 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX2Q99626 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CDX2Q99626 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX2Q99626 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 HMGA1P7-201ENST00000406908 502 ntBASIC18.12■□□□□ 0.49
CDX2Q99626 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.12■□□□□ 0.49
CDX2Q99626 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.12■□□□□ 0.49
CDX2Q99626 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.12■□□□□ 0.49
CDX2Q99626 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 DUTP2-201ENST00000519164 463 ntBASIC18.12■□□□□ 0.49
CDX2Q99626 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX2Q99626 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 AC027307.2-201ENST00000591252 911 ntBASIC18.12■□□□□ 0.49
CDX2Q99626 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CDX2Q99626 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CDX2Q99626 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDX2Q99626 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX2Q99626 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX2Q99626 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.11■□□□□ 0.49
CDX2Q99626 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CDX2Q99626 AL032819.2-201ENST00000624543 2162 ntBASIC18.11■□□□□ 0.49
CDX2Q99626 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CDX2Q99626 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CDX2Q99626 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
CDX2Q99626 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CDX2Q99626 AC092506.1-202ENST00000401022 528 ntBASIC18.11■□□□□ 0.49
CDX2Q99626 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CDX2Q99626 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.11■□□□□ 0.49
CDX2Q99626 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.11■□□□□ 0.49
CDX2Q99626 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 AP005482.1-201ENST00000563722 1273 ntBASIC18.11■□□□□ 0.49
CDX2Q99626 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CDX2Q99626 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.11■□□□□ 0.49
CDX2Q99626 PKD1P6-201ENST00000343738 4769 ntBASIC18.11■□□□□ 0.49
CDX2Q99626 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX2Q99626 ESPNP-201ENST00000270691 2015 ntBASIC18.11■□□□□ 0.49
CDX2Q99626 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX2Q99626 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX2Q99626 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CDX2Q99626 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CDX2Q99626 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX2Q99626 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms