Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLIP3Q96DZ5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLIP3Q96DZ5 PHGDH-209ENST00000641074 1780 ntBASIC16.97■□□□□ 0.31
CLIP3Q96DZ5 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.97■□□□□ 0.31
CLIP3Q96DZ5 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLIP3Q96DZ5 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 AC135776.1-201ENST00000319817 2481 ntBASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 INTS4P1-201ENST00000438455 1935 ntBASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 AF186996.4-201ENST00000467186 377 ntBASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 AC106795.1-205ENST00000512851 1056 ntBASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 AC011467.2-201ENST00000598425 242 ntBASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CLIP3Q96DZ5 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLIP3Q96DZ5 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 MTDHP3-201ENST00000594186 672 ntBASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 TP73-AS1-207ENST00000624167 988 ntBASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 AC022898.2-201ENST00000616822 1312 ntBASIC16.95■□□□□ 0.3
CLIP3Q96DZ5 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms