Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.14■□□□□ 0.34
VRK3Q8IV63 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.14■□□□□ 0.34
VRK3Q8IV63 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 AC108860.2-201ENST00000562760 2183 ntBASIC17.14■□□□□ 0.33
VRK3Q8IV63 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 AKR1C7P-201ENST00000305623 895 ntBASIC17.14■□□□□ 0.33
VRK3Q8IV63 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 HTR7P1-202ENST00000624664 4411 ntBASIC17.14■□□□□ 0.33
VRK3Q8IV63 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
VRK3Q8IV63 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VRK3Q8IV63 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 MYCLP1-201ENST00000372451 1075 ntBASIC17.13■□□□□ 0.33
VRK3Q8IV63 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 IFNL4P1-201ENST00000607083 540 ntBASIC17.13■□□□□ 0.33
VRK3Q8IV63 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 AC148477.5-201ENST00000625164 1645 ntBASIC17.13■□□□□ 0.33
VRK3Q8IV63 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VRK3Q8IV63 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 AP005117.1-201ENST00000584346 1413 ntBASIC17.13■□□□□ 0.33
VRK3Q8IV63 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VRK3Q8IV63 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms