Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 PRSS29P-201ENST00000440800 595 ntBASIC18.62■□□□□ 0.57
USP41Q3LFD5 VN2R19P-201ENST00000442399 1052 ntBASIC18.62■□□□□ 0.57
USP41Q3LFD5 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 AC097637.2-201ENST00000624096 1997 ntBASIC18.62■□□□□ 0.57
USP41Q3LFD5 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 PCDHB18P-201ENST00000524813 2368 ntBASIC18.62■□□□□ 0.57
USP41Q3LFD5 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.62■□□□□ 0.57
USP41Q3LFD5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP41Q3LFD5 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 AL390961.4-201ENST00000623958 2535 ntBASIC18.61■□□□□ 0.57
USP41Q3LFD5 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP41Q3LFD5 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USP41Q3LFD5 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 GPR89P-201ENST00000407924 1495 ntBASIC18.6■□□□□ 0.57
USP41Q3LFD5 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 AC002310.6-201ENST00000624451 1377 ntBASIC18.6■□□□□ 0.57
USP41Q3LFD5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 AC004967.1-201ENST00000453589 447 ntBASIC18.6■□□□□ 0.57
USP41Q3LFD5 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 AC004790.2-201ENST00000623588 572 ntBASIC18.6■□□□□ 0.57
USP41Q3LFD5 AL805961.1-202ENST00000641562 540 ntBASIC18.6■□□□□ 0.57
USP41Q3LFD5 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
USP41Q3LFD5 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP41Q3LFD5 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms