Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 LAGE3P1-201ENST00000425356 484 ntBASIC16.86■□□□□ 0.29
COL28A1Q2UY09 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 AC108751.1-201ENST00000490852 363 ntBASIC16.86■□□□□ 0.29
COL28A1Q2UY09 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 AC011467.2-201ENST00000598425 242 ntBASIC16.86■□□□□ 0.29
COL28A1Q2UY09 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL28A1Q2UY09 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 AC015922.1-201ENST00000421102 1152 ntBASIC16.85■□□□□ 0.29
COL28A1Q2UY09 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.85■□□□□ 0.29
COL28A1Q2UY09 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 AC004449.1-201ENST00000564240 433 ntBASIC16.85■□□□□ 0.29
COL28A1Q2UY09 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 AC005593.1-201ENST00000624894 515 ntBASIC16.85■□□□□ 0.29
COL28A1Q2UY09 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL28A1Q2UY09 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC073592.3-201ENST00000625118 1834 ntBASIC16.84■□□□□ 0.29
COL28A1Q2UY09 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 MKNK2P1-201ENST00000437526 628 ntBASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC069262.1-201ENST00000539058 672 ntBASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AL513190.1-201ENST00000621254 727 ntBASIC16.84■□□□□ 0.29
COL28A1Q2UY09 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AL163051.1-201ENST00000569214 1512 ntBASIC16.84■□□□□ 0.29
COL28A1Q2UY09 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms