Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.99■□□□□ 0.31
FOXA1P55317 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.99■□□□□ 0.31
FOXA1P55317 AC211429.1-201ENST00000415277 523 ntBASIC16.99■□□□□ 0.31
FOXA1P55317 AC104076.2-201ENST00000448912 469 ntBASIC16.99■□□□□ 0.31
FOXA1P55317 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.99■□□□□ 0.31
FOXA1P55317 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.99■□□□□ 0.31
FOXA1P55317 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.99■□□□□ 0.31
FOXA1P55317 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
FOXA1P55317 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
FOXA1P55317 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.98■□□□□ 0.31
FOXA1P55317 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA1P55317 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.98■□□□□ 0.31
FOXA1P55317 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
FOXA1P55317 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 AC092053.1-201ENST00000605787 1936 ntBASIC16.98■□□□□ 0.31
FOXA1P55317 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.98■□□□□ 0.31
FOXA1P55317 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
FOXA1P55317 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.98■□□□□ 0.31
FOXA1P55317 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 COX5BP2-201ENST00000392354 334 ntBASIC16.98■□□□□ 0.31
FOXA1P55317 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.98■□□□□ 0.31
FOXA1P55317 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.98■□□□□ 0.31
FOXA1P55317 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
FOXA1P55317 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.98■□□□□ 0.31
FOXA1P55317 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA1P55317 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.98■□□□□ 0.31
FOXA1P55317 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA1P55317 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
FOXA1P55317 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA1P55317 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 AC005915.1-201ENST00000624912 2018 ntBASIC16.97■□□□□ 0.31
FOXA1P55317 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 AC097374.2-201ENST00000618617 1306 ntBASIC16.97■□□□□ 0.31
FOXA1P55317 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.97■□□□□ 0.31
FOXA1P55317 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
FOXA1P55317 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.97■□□□□ 0.31
FOXA1P55317 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.97■□□□□ 0.31
FOXA1P55317 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA1P55317 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA1P55317 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms