Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC026150.2-201ENST00000564693 1156 ntBASIC20.86■□□□□ 0.93
COL4A5P29400 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A5P29400 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A5P29400 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A5P29400 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A5P29400 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
COL4A5P29400 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A5P29400 AC046185.3-201ENST00000623228 1824 ntBASIC20.86■□□□□ 0.93
COL4A5P29400 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A5P29400 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COL4A5P29400 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A5P29400 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A5P29400 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.86■□□□□ 0.93
COL4A5P29400 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.86■□□□□ 0.93
COL4A5P29400 LINC01225-203ENST00000563550 1244 ntBASIC20.86■□□□□ 0.93
COL4A5P29400 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A5P29400 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A5P29400 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A5P29400 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A5P29400 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A5P29400 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A5P29400 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A5P29400 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL4A5P29400 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A5P29400 GK-202ENST00000378941 458 ntTSL 3 BASIC20.85■□□□□ 0.93
COL4A5P29400 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A5P29400 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.85■□□□□ 0.93
COL4A5P29400 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.85■□□□□ 0.93
COL4A5P29400 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A5P29400 CECR7-204ENST00000609932 568 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A5P29400 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A5P29400 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A5P29400 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A5P29400 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A5P29400 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.85■□□□□ 0.93
COL4A5P29400 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A5P29400 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A5P29400 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
COL4A5P29400 VMA21-202ENST00000370361 693 ntTSL 5 BASIC20.84■□□□□ 0.93
COL4A5P29400 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A5P29400 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.84■□□□□ 0.93
COL4A5P29400 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
COL4A5P29400 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A5P29400 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.84■□□□□ 0.93
COL4A5P29400 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
COL4A5P29400 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A5P29400 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
COL4A5P29400 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A5P29400 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A5P29400 AC084121.4-201ENST00000641598 221 ntBASIC20.83■□□□□ 0.93
COL4A5P29400 AL645728.2-201ENST00000641974 660 ntBASIC20.83■□□□□ 0.93
COL4A5P29400 AF228730.8-201ENST00000642140 221 ntBASIC20.83■□□□□ 0.93
COL4A5P29400 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A5P29400 AKAP8P1-201ENST00000434743 1349 ntBASIC20.83■□□□□ 0.93
COL4A5P29400 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.83■□□□□ 0.93
COL4A5P29400 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A5P29400 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A5P29400 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
COL4A5P29400 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A5P29400 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A5P29400 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A5P29400 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.92
COL4A5P29400 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A5P29400 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A5P29400 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A5P29400 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.83■□□□□ 0.92
COL4A5P29400 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A5P29400 AL158211.3-201ENST00000607385 239 ntBASIC20.83■□□□□ 0.92
COL4A5P29400 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL4A5P29400 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL4A5P29400 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A5P29400 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A5P29400 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
COL4A5P29400 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.82■□□□□ 0.92
COL4A5P29400 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A5P29400 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A5P29400 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.82■□□□□ 0.92
COL4A5P29400 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.82■□□□□ 0.92
COL4A5P29400 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC20.82■□□□□ 0.92
COL4A5P29400 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.82■□□□□ 0.92
COL4A5P29400 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A5P29400 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A5P29400 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A5P29400 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A5P29400 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A5P29400 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms