Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 NKILA-202ENST00000614771 2598 ntBASIC13.41□□□□□ -0.26
HLA-DMBP28068 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DMBP28068 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.41□□□□□ -0.26
HLA-DMBP28068 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 KRT18P48-201ENST00000434763 852 ntBASIC13.4□□□□□ -0.26
HLA-DMBP28068 AL359075.1-203ENST00000462729 1002 ntBASIC13.4□□□□□ -0.26
HLA-DMBP28068 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 LINC01451-201ENST00000623792 534 ntBASIC13.4□□□□□ -0.26
HLA-DMBP28068 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
HLA-DMBP28068 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HLA-DMBP28068 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
HLA-DMBP28068 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC13.4□□□□□ -0.27
HLA-DMBP28068 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms