Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
BDNFP23560 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
BDNFP23560 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
BDNFP23560 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
BDNFP23560 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
BDNFP23560 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.5■□□□□ 0.55
BDNFP23560 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
BDNFP23560 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
BDNFP23560 SLC25A6P5-201ENST00000435663 894 ntBASIC18.5■□□□□ 0.55
BDNFP23560 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.5■□□□□ 0.55
BDNFP23560 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.5■□□□□ 0.55
BDNFP23560 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.5■□□□□ 0.55
BDNFP23560 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.5■□□□□ 0.55
BDNFP23560 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.5■□□□□ 0.55
BDNFP23560 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.5■□□□□ 0.55
BDNFP23560 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.5■□□□□ 0.55
BDNFP23560 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.5■□□□□ 0.55
BDNFP23560 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.5■□□□□ 0.55
BDNFP23560 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.5■□□□□ 0.55
BDNFP23560 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
BDNFP23560 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
BDNFP23560 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
BDNFP23560 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
BDNFP23560 HLA-J-201ENST00000462773 1622 ntBASIC18.49■□□□□ 0.55
BDNFP23560 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
BDNFP23560 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.49■□□□□ 0.55
BDNFP23560 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
BDNFP23560 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 AC018470.1-201ENST00000624790 3129 ntBASIC18.49■□□□□ 0.55
BDNFP23560 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.49■□□□□ 0.55
BDNFP23560 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.49■□□□□ 0.55
BDNFP23560 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.49■□□□□ 0.55
BDNFP23560 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.49■□□□□ 0.55
BDNFP23560 SIGLEC30P-201ENST00000455569 941 ntBASIC18.49■□□□□ 0.55
BDNFP23560 AC092910.1-201ENST00000482027 1129 ntBASIC18.49■□□□□ 0.55
BDNFP23560 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.49■□□□□ 0.55
BDNFP23560 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.49■□□□□ 0.55
BDNFP23560 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.49■□□□□ 0.55
BDNFP23560 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.49■□□□□ 0.55
BDNFP23560 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.49■□□□□ 0.55
BDNFP23560 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.49■□□□□ 0.55
BDNFP23560 AC008735.5-201ENST00000623544 497 ntBASIC18.49■□□□□ 0.55
BDNFP23560 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
BDNFP23560 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.49■□□□□ 0.55
BDNFP23560 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BDNFP23560 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.49■□□□□ 0.55
BDNFP23560 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
BDNFP23560 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
BDNFP23560 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
BDNFP23560 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
BDNFP23560 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
BDNFP23560 AC008764.6-201ENST00000595909 2069 ntBASIC18.48■□□□□ 0.55
BDNFP23560 AC009336.1-201ENST00000608941 1553 ntBASIC18.48■□□□□ 0.55
BDNFP23560 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
BDNFP23560 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 MYCLP1-201ENST00000372451 1075 ntBASIC18.48■□□□□ 0.55
BDNFP23560 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.48■□□□□ 0.55
BDNFP23560 LAGE3P1-201ENST00000425356 484 ntBASIC18.48■□□□□ 0.55
BDNFP23560 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.48■□□□□ 0.55
BDNFP23560 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.48■□□□□ 0.55
BDNFP23560 SLC25A1P1-201ENST00000528351 927 ntBASIC18.48■□□□□ 0.55
BDNFP23560 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.48■□□□□ 0.55
BDNFP23560 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
BDNFP23560 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
BDNFP23560 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
BDNFP23560 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
BDNFP23560 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.48■□□□□ 0.55
BDNFP23560 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
BDNFP23560 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BDNFP23560 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms