Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH3P22223 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH3P22223 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CDH3P22223 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CDH3P22223 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 FAAHP1-202ENST00000446499 1238 ntBASIC17.22■□□□□ 0.35
CDH3P22223 EMBP1-201ENST00000458200 901 ntBASIC17.22■□□□□ 0.35
CDH3P22223 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.22■□□□□ 0.35
CDH3P22223 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.22■□□□□ 0.35
CDH3P22223 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH3P22223 AC114341.1-201ENST00000618070 349 ntBASIC17.22■□□□□ 0.35
CDH3P22223 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH3P22223 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH3P22223 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDH3P22223 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH3P22223 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH3P22223 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
CDH3P22223 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CDH3P22223 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 TP73-AS1-210ENST00000637775 1455 ntBASIC17.21■□□□□ 0.35
CDH3P22223 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
CDH3P22223 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH3P22223 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.21■□□□□ 0.35
CDH3P22223 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH3P22223 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH3P22223 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH3P22223 AL138831.2-201ENST00000606564 490 ntBASIC17.21■□□□□ 0.35
CDH3P22223 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH3P22223 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH3P22223 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH3P22223 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CDH3P22223 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH3P22223 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
CDH3P22223 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH3P22223 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH3P22223 AC018695.7-201ENST00000624587 2492 ntBASIC17.21■□□□□ 0.34
CDH3P22223 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH3P22223 AC125634.1-201ENST00000438758 1403 ntBASIC17.21■□□□□ 0.34
CDH3P22223 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.34
CDH3P22223 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH3P22223 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.21■□□□□ 0.34
CDH3P22223 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH3P22223 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH3P22223 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CDH3P22223 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CDH3P22223 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH3P22223 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CDH3P22223 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH3P22223 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms