Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL9A1P20849 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL9A1P20849 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.94■□□□□ 0.46
COL9A1P20849 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.94■□□□□ 0.46
COL9A1P20849 CROCCP3-202ENST00000420820 1947 ntBASIC17.94■□□□□ 0.46
COL9A1P20849 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL9A1P20849 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL9A1P20849 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.93■□□□□ 0.46
COL9A1P20849 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL9A1P20849 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.93■□□□□ 0.46
COL9A1P20849 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.93■□□□□ 0.46
COL9A1P20849 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.93■□□□□ 0.46
COL9A1P20849 AD001527.2-201ENST00000622994 785 ntBASIC17.93■□□□□ 0.46
COL9A1P20849 AC007064.4-201ENST00000637740 555 ntBASIC17.93■□□□□ 0.46
COL9A1P20849 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL9A1P20849 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.93■□□□□ 0.46
COL9A1P20849 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL9A1P20849 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL9A1P20849 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL9A1P20849 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.93■□□□□ 0.46
COL9A1P20849 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.93■□□□□ 0.46
COL9A1P20849 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL9A1P20849 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.92■□□□□ 0.46
COL9A1P20849 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 AC006504.4-201ENST00000592118 1568 ntBASIC17.92■□□□□ 0.46
COL9A1P20849 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
COL9A1P20849 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.92■□□□□ 0.46
COL9A1P20849 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC17.92■□□□□ 0.46
COL9A1P20849 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.92■□□□□ 0.46
COL9A1P20849 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.92■□□□□ 0.46
COL9A1P20849 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.92■□□□□ 0.46
COL9A1P20849 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 MIR4538-201ENST00000581377 78 ntBASIC17.92■□□□□ 0.46
COL9A1P20849 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.92■□□□□ 0.46
COL9A1P20849 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 AC008667.4-201ENST00000607370 168 ntBASIC17.92■□□□□ 0.46
COL9A1P20849 AC010654.1-201ENST00000615722 808 ntBASIC17.92■□□□□ 0.46
COL9A1P20849 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.92■□□□□ 0.46
COL9A1P20849 PAX6-247ENST00000638965 979 ntTSL 5 BASIC17.92■□□□□ 0.46
COL9A1P20849 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.92■□□□□ 0.46
COL9A1P20849 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
COL9A1P20849 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.92■□□□□ 0.46
COL9A1P20849 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL9A1P20849 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.92■□□□□ 0.46
COL9A1P20849 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL9A1P20849 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.91■□□□□ 0.46
COL9A1P20849 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
COL9A1P20849 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.91■□□□□ 0.46
COL9A1P20849 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.91■□□□□ 0.46
COL9A1P20849 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.91■□□□□ 0.46
COL9A1P20849 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.91■□□□□ 0.46
COL9A1P20849 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.91■□□□□ 0.46
COL9A1P20849 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.91■□□□□ 0.46
COL9A1P20849 RHOQP3-201ENST00000437982 621 ntBASIC17.91■□□□□ 0.46
COL9A1P20849 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.91■□□□□ 0.46
COL9A1P20849 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.91■□□□□ 0.46
COL9A1P20849 AC122714.2-201ENST00000502787 707 ntBASIC17.91■□□□□ 0.46
COL9A1P20849 AC023141.13-201ENST00000604991 943 ntBASIC17.91■□□□□ 0.46
COL9A1P20849 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL9A1P20849 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
COL9A1P20849 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL9A1P20849 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.91■□□□□ 0.46
COL9A1P20849 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms