Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RPS2P36-201ENST00000456516 831 ntBASIC18.08■□□□□ 0.49
COL6A3P12111 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A3P12111 AP000842.3-202ENST00000569238 1080 ntBASIC18.08■□□□□ 0.49
COL6A3P12111 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.08■□□□□ 0.49
COL6A3P12111 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A3P12111 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
COL6A3P12111 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.08■□□□□ 0.48
COL6A3P12111 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A3P12111 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A3P12111 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.08■□□□□ 0.48
COL6A3P12111 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.08■□□□□ 0.48
COL6A3P12111 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A3P12111 CTBP2P3-201ENST00000585629 1255 ntBASIC18.08■□□□□ 0.48
COL6A3P12111 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.08■□□□□ 0.48
COL6A3P12111 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL6A3P12111 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A3P12111 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A3P12111 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL6A3P12111 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
COL6A3P12111 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.08■□□□□ 0.48
COL6A3P12111 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.08■□□□□ 0.48
COL6A3P12111 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.08■□□□□ 0.48
COL6A3P12111 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL6A3P12111 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC18.07■□□□□ 0.48
COL6A3P12111 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.07■□□□□ 0.48
COL6A3P12111 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 GNAQP1-201ENST00000444815 1067 ntBASIC18.07■□□□□ 0.48
COL6A3P12111 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A3P12111 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A3P12111 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 BRWD1P1-201ENST00000401091 371 ntBASIC18.07■□□□□ 0.48
COL6A3P12111 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.07■□□□□ 0.48
COL6A3P12111 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.07■□□□□ 0.48
COL6A3P12111 CROCCP4-201ENST00000457096 498 ntBASIC18.07■□□□□ 0.48
COL6A3P12111 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.07■□□□□ 0.48
COL6A3P12111 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL6A3P12111 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A3P12111 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL6A3P12111 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL6A3P12111 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.07■□□□□ 0.48
COL6A3P12111 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A3P12111 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A3P12111 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 TEX28P1-201ENST00000613479 1221 ntBASIC18.06■□□□□ 0.48
COL6A3P12111 TEX28P2-201ENST00000617764 1221 ntBASIC18.06■□□□□ 0.48
COL6A3P12111 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC18.06■□□□□ 0.48
COL6A3P12111 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.06■□□□□ 0.48
COL6A3P12111 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.06■□□□□ 0.48
COL6A3P12111 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.06■□□□□ 0.48
COL6A3P12111 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.06■□□□□ 0.48
COL6A3P12111 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A3P12111 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL6A3P12111 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC18.05■□□□□ 0.48
COL6A3P12111 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.05■□□□□ 0.48
COL6A3P12111 AC243960.2-201ENST00000600996 747 ntBASIC18.05■□□□□ 0.48
COL6A3P12111 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A3P12111 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL6A3P12111 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL6A3P12111 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL6A3P12111 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL6A3P12111 AC073592.8-201ENST00000624126 511 ntBASIC18.05■□□□□ 0.48
COL6A3P12111 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.05■□□□□ 0.48
COL6A3P12111 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A3P12111 AC108725.1-201ENST00000495472 409 ntBASIC18.05■□□□□ 0.48
COL6A3P12111 AC106872.11-201ENST00000605838 421 ntBASIC18.05■□□□□ 0.48
COL6A3P12111 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A3P12111 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A3P12111 AC092978.1-202ENST00000637590 1327 ntBASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms