Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
RAPGEF3O95398 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
RAPGEF3O95398 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
RAPGEF3O95398 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RAPGEF3O95398 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RAPGEF3O95398 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC26.02■■□□□ 1.76
RAPGEF3O95398 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC26.02■■□□□ 1.76
RAPGEF3O95398 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RAPGEF3O95398 HMGA1P7-201ENST00000406908 502 ntBASIC26.02■■□□□ 1.76
RAPGEF3O95398 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC26.02■■□□□ 1.76
RAPGEF3O95398 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC26.02■■□□□ 1.76
RAPGEF3O95398 MIR4515-201ENST00000584082 81 ntBASIC26.02■■□□□ 1.76
RAPGEF3O95398 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RAPGEF3O95398 AC004233.3-201ENST00000607794 1269 ntBASIC26.02■■□□□ 1.76
RAPGEF3O95398 AL161645.1-201ENST00000622716 1255 ntBASIC26.02■■□□□ 1.76
RAPGEF3O95398 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
RAPGEF3O95398 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RAPGEF3O95398 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RAPGEF3O95398 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 GPR53P-205ENST00000457298 1084 ntBASIC26.01■■□□□ 1.75
RAPGEF3O95398 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
RAPGEF3O95398 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC26.01■■□□□ 1.75
RAPGEF3O95398 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
RAPGEF3O95398 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC26■■□□□ 1.75
RAPGEF3O95398 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC26■■□□□ 1.75
RAPGEF3O95398 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC26■■□□□ 1.75
RAPGEF3O95398 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC26■■□□□ 1.75
RAPGEF3O95398 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC26■■□□□ 1.75
RAPGEF3O95398 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC26■■□□□ 1.75
RAPGEF3O95398 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC26■■□□□ 1.75
RAPGEF3O95398 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
RAPGEF3O95398 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC26■■□□□ 1.75
RAPGEF3O95398 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
RAPGEF3O95398 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC26■■□□□ 1.75
RAPGEF3O95398 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
RAPGEF3O95398 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
RAPGEF3O95398 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC25.99■■□□□ 1.75
RAPGEF3O95398 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
RAPGEF3O95398 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC25.99■■□□□ 1.75
RAPGEF3O95398 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
RAPGEF3O95398 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC25.99■■□□□ 1.75
RAPGEF3O95398 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
RAPGEF3O95398 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC25.99■■□□□ 1.75
RAPGEF3O95398 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC25.99■■□□□ 1.75
RAPGEF3O95398 AL135999.2-201ENST00000622438 1686 ntBASIC25.99■■□□□ 1.75
RAPGEF3O95398 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
RAPGEF3O95398 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC25.98■■□□□ 1.75
RAPGEF3O95398 AL096828.2-201ENST00000567259 1965 ntBASIC25.98■■□□□ 1.75
RAPGEF3O95398 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
RAPGEF3O95398 MYCLP1-201ENST00000372451 1075 ntBASIC25.98■■□□□ 1.75
RAPGEF3O95398 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC25.98■■□□□ 1.75
RAPGEF3O95398 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
RAPGEF3O95398 AC027369.6-201ENST00000525520 931 ntBASIC25.98■■□□□ 1.75
RAPGEF3O95398 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
RAPGEF3O95398 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC25.98■■□□□ 1.75
RAPGEF3O95398 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC25.98■■□□□ 1.75
RAPGEF3O95398 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
RAPGEF3O95398 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
RAPGEF3O95398 AC022144.1-201ENST00000602255 1580 ntBASIC25.98■■□□□ 1.75
RAPGEF3O95398 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
RAPGEF3O95398 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
RAPGEF3O95398 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC25.98■■□□□ 1.75
RAPGEF3O95398 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
RAPGEF3O95398 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC25.97■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms