Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 FAM220CP-201ENST00000395253 831 ntBASIC18.8■□□□□ 0.6
FOXN3O00409 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.8■□□□□ 0.6
FOXN3O00409 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.8■□□□□ 0.6
FOXN3O00409 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.8■□□□□ 0.6
FOXN3O00409 AP002414.4-201ENST00000589764 1148 ntBASIC18.8■□□□□ 0.6
FOXN3O00409 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
FOXN3O00409 KRT8P10-201ENST00000450021 1447 ntBASIC18.8■□□□□ 0.6
FOXN3O00409 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.8■□□□□ 0.6
FOXN3O00409 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN3O00409 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.79■□□□□ 0.6
FOXN3O00409 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.79■□□□□ 0.6
FOXN3O00409 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.79■□□□□ 0.6
FOXN3O00409 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.79■□□□□ 0.6
FOXN3O00409 AC009533.2-201ENST00000543664 586 ntBASIC18.79■□□□□ 0.6
FOXN3O00409 MIR3180-1-201ENST00000580374 94 ntBASIC18.79■□□□□ 0.6
FOXN3O00409 MIR3180-3-201ENST00000584616 94 ntBASIC18.79■□□□□ 0.6
FOXN3O00409 AL445228.2-201ENST00000605589 952 ntBASIC18.79■□□□□ 0.6
FOXN3O00409 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
FOXN3O00409 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
FOXN3O00409 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
FOXN3O00409 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.79■□□□□ 0.6
FOXN3O00409 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN3O00409 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.79■□□□□ 0.6
FOXN3O00409 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
FOXN3O00409 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXN3O00409 AC103564.2-201ENST00000432853 1299 ntBASIC18.78■□□□□ 0.6
FOXN3O00409 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.78■□□□□ 0.6
FOXN3O00409 VENTXP7-201ENST00000475503 772 ntBASIC18.78■□□□□ 0.6
FOXN3O00409 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXN3O00409 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.78■□□□□ 0.6
FOXN3O00409 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXN3O00409 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
FOXN3O00409 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
FOXN3O00409 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN3O00409 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
FOXN3O00409 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
FOXN3O00409 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
FOXN3O00409 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
FOXN3O00409 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXN3O00409 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXN3O00409 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 AC116353.5-201ENST00000638148 1699 ntBASIC18.77■□□□□ 0.6
FOXN3O00409 PRORSD1P-202ENST00000563365 2154 ntBASIC18.77■□□□□ 0.6
FOXN3O00409 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXN3O00409 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
FOXN3O00409 TOB2P1-201ENST00000469761 992 ntBASIC18.77■□□□□ 0.6
FOXN3O00409 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.77■□□□□ 0.6
FOXN3O00409 IGHV3-52-201ENST00000519770 353 ntBASIC18.77■□□□□ 0.6
FOXN3O00409 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXN3O00409 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXN3O00409 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
FOXN3O00409 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.77■□□□□ 0.6
FOXN3O00409 AC011467.2-201ENST00000598425 242 ntBASIC18.77■□□□□ 0.6
FOXN3O00409 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXN3O00409 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN3O00409 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms