Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 DUTP2-201ENST00000519164 463 ntBASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 AC012640.2-201ENST00000561606 901 ntBASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 AC140113.2-201ENST00000604370 208 ntBASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 MIR1199-201ENST00000621445 119 ntBASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 KRT18P3-201ENST00000451602 1288 ntBASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 PGAM5P1-201ENST00000518923 814 ntBASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 AC006557.2-201ENST00000592985 1240 ntBASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 AD001527.2-201ENST00000622994 785 ntBASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 AC073592.4-201ENST00000623827 446 ntBASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSX2IPQ9Y2D8 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SSX2IPQ9Y2D8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SSX2IPQ9Y2D8 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SSX2IPQ9Y2D8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 AL356488.2-201ENST00000602755 427 ntBASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 SIGLEC16-201ENST00000599858 1437 ntBASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 AC093010.1-201ENST00000473625 1624 ntBASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SSX2IPQ9Y2D8 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSX2IPQ9Y2D8 RNA5SP416-201ENST00000516838 111 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms