Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 CROCCP2-202ENST00000412962 2773 ntBASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
AP4E1Q9UPM8 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 AL645608.8-201ENST00000606034 2086 ntBASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 AC103564.2-201ENST00000432853 1299 ntBASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 IGHV3-52-201ENST00000519770 353 ntBASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 AC099336.1-202ENST00000602961 463 ntBASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 AL139327.4-201ENST00000612362 153 ntBASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
AP4E1Q9UPM8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AL049757.1-201ENST00000616842 1596 ntBASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.23■□□□□ 0.51
AP4E1Q9UPM8 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 INTS4P1-201ENST00000438455 1935 ntBASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms