Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 LYSMD4-203ENST00000378904 2122 ntBASIC18.16■□□□□ 0.5
PCDH9Q9HC56 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDH9Q9HC56 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 NKILA-202ENST00000614771 2598 ntBASIC18.15■□□□□ 0.5
PCDH9Q9HC56 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 GUSBP12-201ENST00000513727 720 ntBASIC18.15■□□□□ 0.5
PCDH9Q9HC56 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDH9Q9HC56 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
PCDH9Q9HC56 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 AC090616.6-201ENST00000582640 721 ntBASIC18.14■□□□□ 0.49
PCDH9Q9HC56 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDH9Q9HC56 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms