Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 STARP1-201ENST00000397973 869 ntBASIC13.2□□□□□ -0.3
LINC00477Q96M19 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 CD70-202ENST00000423145 881 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC13.2□□□□□ -0.3
LINC00477Q96M19 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 AP003733.1-201ENST00000491725 852 ntBASIC13.2□□□□□ -0.3
LINC00477Q96M19 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 AC079602.3-201ENST00000623931 403 ntBASIC13.2□□□□□ -0.3
LINC00477Q96M19 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 AC009053.2-201ENST00000563701 2365 ntBASIC13.2□□□□□ -0.3
LINC00477Q96M19 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.19□□□□□ -0.3
LINC00477Q96M19 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 DUT-205ENST00000558813 769 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 ZNF444P1-201ENST00000559497 298 ntBASIC13.19□□□□□ -0.3
LINC00477Q96M19 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 LITAF-220ENST00000620789 692 ntTSL 5 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC00477Q96M19 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.19□□□□□ -0.3
LINC00477Q96M19 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 AC080080.1-201ENST00000625121 2420 ntBASIC13.18□□□□□ -0.3
LINC00477Q96M19 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 BX664615.1-201ENST00000443558 458 ntBASIC13.18□□□□□ -0.3
LINC00477Q96M19 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 DET1-205ENST00000558413 583 ntTSL 4 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms