Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 TPM4P1-201ENST00000436100 807 ntBASIC15.81■□□□□ 0.12
CPNE4Q96A23 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 REXO1L6P-202ENST00000619970 1078 ntBASIC15.81■□□□□ 0.12
CPNE4Q96A23 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
CPNE4Q96A23 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CPNE4Q96A23 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 FAAHP1-202ENST00000446499 1238 ntBASIC15.8■□□□□ 0.12
CPNE4Q96A23 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 SAPCD2P3-201ENST00000455031 850 ntBASIC15.8■□□□□ 0.12
CPNE4Q96A23 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CPNE4Q96A23 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CPNE4Q96A23 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 RBM17P3-201ENST00000417687 1192 ntBASIC15.79■□□□□ 0.12
CPNE4Q96A23 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 ABCD1P5-201ENST00000445663 754 ntBASIC15.79■□□□□ 0.12
CPNE4Q96A23 AC132008.2-207ENST00000454517 770 ntBASIC15.79■□□□□ 0.12
CPNE4Q96A23 RN7SL510P-201ENST00000581311 263 ntBASIC15.79■□□□□ 0.12
CPNE4Q96A23 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CPNE4Q96A23 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.79■□□□□ 0.12
CPNE4Q96A23 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CPNE4Q96A23 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.78■□□□□ 0.12
CPNE4Q96A23 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms