Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB4Q8WW32 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HMGB4Q8WW32 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB4Q8WW32 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 WIZP1-201ENST00000531444 2299 ntBASIC17.58■□□□□ 0.4
HMGB4Q8WW32 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 MRPL20P1-201ENST00000400819 433 ntBASIC17.58■□□□□ 0.4
HMGB4Q8WW32 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 STK25P1-201ENST00000585406 838 ntBASIC17.58■□□□□ 0.4
HMGB4Q8WW32 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 AC010654.1-201ENST00000615722 808 ntBASIC17.58■□□□□ 0.4
HMGB4Q8WW32 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 AL805961.1-202ENST00000641562 540 ntBASIC17.58■□□□□ 0.4
HMGB4Q8WW32 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 AC135776.1-201ENST00000319817 2481 ntBASIC17.58■□□□□ 0.4
HMGB4Q8WW32 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB4Q8WW32 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB4Q8WW32 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 PTCHD3P3-201ENST00000403073 906 ntBASIC17.56■□□□□ 0.4
HMGB4Q8WW32 IGLL3P-201ENST00000412472 434 ntBASIC17.56■□□□□ 0.4
HMGB4Q8WW32 AC254562.1-201ENST00000417586 456 ntBASIC17.56■□□□□ 0.4
HMGB4Q8WW32 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 CEND1P1-201ENST00000451006 455 ntBASIC17.56■□□□□ 0.4
HMGB4Q8WW32 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB4Q8WW32 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB4Q8WW32 AP000974.1-201ENST00000623909 2387 ntBASIC17.55■□□□□ 0.4
HMGB4Q8WW32 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB4Q8WW32 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB4Q8WW32 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB4Q8WW32 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB4Q8WW32 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms