Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 GIMAP3P-201ENST00000495150 836 ntBASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 IGHV3-62-201ENST00000520057 340 ntBASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 MIR6805-201ENST00000615055 62 ntBASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMC1BQ8NDV3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.7■□□□□ 0.91
SMC1BQ8NDV3 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.91
SMC1BQ8NDV3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 LINC00982-205ENST00000420957 435 ntBASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 RARRES2P8-201ENST00000566335 367 ntBASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 MIR6080-201ENST00000617359 66 ntBASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.7■□□□□ 0.9
SMC1BQ8NDV3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 SPCS2P4-201ENST00000436160 681 ntBASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMC1BQ8NDV3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 SPTLC1P1-201ENST00000447199 261 ntBASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 TP53TG3HP-202ENST00000569755 579 ntBASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC1BQ8NDV3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms