Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
ZNF540Q8NDQ6 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 ARMC10P1-201ENST00000313754 855 ntBASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 AC004951.3-201ENST00000418645 1148 ntBASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 AP000692.2-201ENST00000608391 879 ntBASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ZNF540Q8NDQ6 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 MESTP1-201ENST00000404287 994 ntBASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 CKBP1-201ENST00000565489 1086 ntBASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SLC25A1P4-201ENST00000567977 778 ntBASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ZNF540Q8NDQ6 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 TERF1P1-201ENST00000311003 1181 ntBASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 MCCD1P1-208ENST00000445732 328 ntBASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 CCR12P-201ENST00000446203 998 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms