Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 AP002414.2-201ENST00000591780 3365 ntBASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 SDHAP1-207ENST00000440850 2000 ntBASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 UQCRFS1P1-201ENST00000435169 820 ntBASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 AC104417.2-201ENST00000562989 1793 ntBASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28AQ8IWP9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 AC092171.3-201ENST00000610122 2651 ntBASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 AL359258.3-201ENST00000622910 2331 ntBASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 KRT18P68-201ENST00000392293 1000 ntBASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 OR10C1-204ENST00000622521 1039 ntBASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 AC068338.2-201ENST00000563278 1430 ntBASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CCDC28AQ8IWP9 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC28AQ8IWP9 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms